The Valgrind tool suite provides a number of debugging and profiling tools that help you make your programs faster and more correct. The most popular of these tools is called Memcheck which can detect many memory-related errors and memory leaks.
Prepare Your Program
Compile your program with -g to include debugging information so that Memcheck's error messages include exact line numbers. Using -O0 is also a good idea, if you can tolerate the slowdown. With -O1 line numbers in error messages can be inaccurate, although generally speaking running Memcheck on code compiled at -O1 works fairly well, and the speed improvement compared to running -O0 is quite significant. Use of -O2 and above is not recommended as Memcheck occasionally reports uninitialised-value errors which don't really exist.
module load valgrind
Running Serial Programs
If you normally run your program like this:
./myprog arg1 arg2
Use this command line:
valgrind --leak-check=yes ./myprog arg1 arg2
Memcheck is the default tool. The --leak-check option turns on the detailed memory leak detector.
Your program will run much slower (eg. 20 to 30 times) than normal, and use a lot more memory. Memcheck will issue messages about memory errors and leaks that it detects.
Running Parallel Programs
In your batch script, simply 1. load the module; 2. add "valgrind" in front of your command. For example, your aprun line will be replaced by the following:
module load valgrind
aprun -n 24 valgrind --leak-check=yes ./myprog arg1 arg2
When using Valgrind to debug your code, you may occasionally encounter error messages of the form:
valgrind: Unrecognised instruction at address 0x6b2f2b
accompanied by your program raising SIGILL and exiting. While this may be bug in your program (which caused it to jump to a non-code location), it may also be an instruction that is not correctly handled by Valgrind. For example, when using the Intel compilers on Edison, you may find this error is raised within the __intel_sse4_strtok() library function, which is in turn using the currently (Nov. 2014) unhandled pcmpistrm SSE4.2 instruction.
There are a couple of ways to work around issues related to unrecognized instructions. The simplest is often to make sure that the code you are debugging is compiled with the minimum level of optimization necessary in order to reproduce the bug you are investigating. This is in general good practice, and will avoid the use of more obscure (typically SIMD) instructions which are more likely to be unhandled.
If you find that this does not work, you may wish to try a different compiler - this can affect both the nature of the optimizations peformed on your code, as well as the libraries to which your code is linked. In the specific example above with __intel_sse4_strtok, switching to the GNU programming environment and recompiling the code being debugged remedied this situation.
Link to Outside Documentation
This page is based on the "Valgrind Quick Start Page". For more information about valgrind, please refer to http://valgrind.org/
For questions on using Valgrind at NERSC contact the consultants at email@example.com.
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