Genepool
The Genepool system is a cluster dedicated to the JGI's computing needs. Phoebe is a smaller test system for Genepool that is primarily used by NERSC staff to test new system configurations and software.
Updates and Status
Find information on known problems, open issues, and recent announcements. Read More »
Configuration
The Genepool system will be made up of a heterogeneous collection of nodes to serve the diverse workload of the JGI users. Read More »
User Environment
When users log into Genepool/Phoebe they have the default global homes environment which includes the JGI software and tools. Read More »
Queues and Policies
Learn about the fair share batch scheduler and queues used on Genepool/Phoebe Read More »
Running Jobs
UGE (Formerly Sun Grid Engine) is the batch system used on Genepool and Phoebe, this section will tell you how to run jobs using this system. Read More »
Software
Users can access software in /jgi/tools. In the future NERSC will create software modules and details regarding software maintenance and access will be found here. Read More »
File storage and I/O
There are 5 main areas on Genepool where users can read, write and store data. This page documents the purpose and performance of each one. Read More »
Transfer and Archive Data
Move your data from Netapps to /project b or /house. Back up and delete data from house! Read More »
Supported Systems
NERSC Supported Systems Purpose Name Legacy Name Cluster genepool.nersc.gov N/A Login nodes genepool01-04 N/A Interactive node gpint01.nersc.gov one.jgi-psf.org Interactive node gpint02.nersc.gov bcg1.jgi-psf.org Interactive node gpint03.nersc.gov bcg2.jgi-psf.org Interactive node gpint04.nersc.gov merced.jgi-psf.org Interactive node gpint05.nersc.gov Interactive node gpint06.nersc.gov zeus.jgi-psf.org Interactive node gpint07.nersc.gov ranger.jgi-psf.org Interactive node… Read More »
