Performance and Optimization
Note: some of the performance tips and recommendations provided in this page were based on the Edison Phase I test resutls. While we do not expect major chagnes in our recomendations, we will sill update this webpage when we have new data for Edison Phase II.
Edison used the same benchmark suite as Hopper, the NERSC-6 benchmark suite, to measure system performance throughout its procurement process. Instead of peak flops, NERSC uses the sustained system performance (SSP) to measure the system computational capability. Edison is 2-3 times faster than Hopper with the seven applications used for SSP. Read More »
Fully optimizing a given application’s performance often requires a deep understand of the source, an accurate profile for a representative run and the ability to have changes to the source accepted upstream. However, in many cases, significant performance gains can be achieved by simply optimizing the code over the matrix of possible compilers, compiler options and libraries available on a given machine. Here, we explore the performance variability of common materials science… Read More »
Core Specialization (CS) is a feature of the Cray operating system that allows the user to reserve one or more cores per node for handling system services, and thus reduce the effects of timing jitter due to interruptions from the operating system at the expense of (possibly) requiring more nodes to run an application. The specialized cores may also be used in conjunction with Cray's MPI asynchronous progress engine  to improve the overlap of communication and computation for applications… Read More »
Edison includes Intel processors with Hyper-Threading Technology. When Hyper-Threading (HT) is enabled, the operating system recognizes each physical core as two logical cores. Each of the two logical cores has resources to store a program state, but they share most of their execution resources. Thus, two independent streams (i.e., processes or threads) can run simultaneously on the same physical core, but at roughly half the speed of a single stream. If a stream running on one of the logical… Read More »
Large scale Python and other dynamic applications may spend huge time at startup. The DLFM library, developed by Mike Davis at Cray, Inc., is a set of functions that can be incorporated into a dynamically-linked application to provide improved performance during the loading of dynamic libraries when running the application at large scale on Edison. To access this library, do module load dlfm Then compile your code using the python available via the dlfm module. To run the DLFM enabled… Read More »