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Software Installed on Jacquard
NERSC staff are actively building and installing tools and applications on Jacquard. Please contact consult@nersc.gov if a particular piece of desired software is not present.
Jacquard Software List
- Jacquard Operating System Software
- Jacquard Parallel Programming Libraries
- Compilers/Languages
- Programming Libraries
- Code Optimization and Profiling Tools
- Code Debugging Tools
- Applications
- General Programming Tools and Utilities; Editors, Shells
The following table lists software installed on Jacquard. Software is available through the modules software management system where a module name is given.
Click on the link called "NERSC" in the Docs column for information about using the software at NERSC.
Jacquard Operating System Software
| Package | Version | Module | Install Date | Date Made Default |
|---|
Jacquard Parallel Programming Libraries
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| Global Arrays | 4.0.7 | ga/4.0.7 | 2007-10-02 | |
| Global Arrays | 4.1.1 | ga/4.1.1 | 2009-01-30 | 2009-02-02 |
| MVAPICH MPI | 0.9.5-mlx1.0.1 | mvapich |
Compilers/Languages
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| as | 2.15.90.0.1.1 | none | ||
| gcc | 4.0.2 | gcc | ||
| java | 1.6.0 | java | ||
| Pathscale | 2.3 | path/2.3 | ||
| Pathscale | 2.4 | path/2.4 | ||
| Pathscale | 2.5 | path/2.5 | ||
| Pathscale | 3.0 | path/3.0 | ||
| Pathscale | 3.1 | path | ||
| Titanium | dev | titanium/dev | ||
| Titanium | dist | titanium | ||
| UPC | stable | upc |
Mathematical Libraries
ACML Math Library
AMD provides a highly optimized library of BLAS, LAPACK and FFT routines, the AMD Core Math Library (ACML) which is described at the ACML User Guide. This library is installed on Jacquard and can be used with both the PathScale and GNU compilers. To use it with the PathScale compilers, load the acml module, and compile and link with the $ACML flag. To use it with the GNU compilers, load the acml_gcc module, and compile and link with the $ACML flag.
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| ACML | 2.6.0 | acml/2.6.0 | ||
| ACML | 3.0.0 | acml/3.0.0 | ||
| ACML | 3.1.0 | acml/3.1.0 | ||
| ACML | 3.6.0 | acml/3.6.0 | ||
| ACML | 4.0.0 | acml | ||
| fftw | 2.1.5 | fftw | ||
| fftw | 3.0.1 | fftw/3.0.1 | ||
| nag | 21 | nag | ||
| nagc | Mark 8 | nagc | ||
| parpack | 2.1 | parpack | ||
| parpack | 2.1 | parpack | ||
| petsc | 2.2.1 | petsc | ||
| petsc | 2.3.0 | petsc/2.3.0 | ||
| petsc | 2.3.1 | petsc/2.3.1 | ||
| scalapack | 1.7 | scalapack | ||
| SPRNG | 1.0 | sprng | ||
| superlu | 3.0 | superlu | ||
| superlu | dist 2.0 | superlu_dist |
I/O Libraries
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| cdo | 1.0.9 | cdo | 2007-11-28 | 2007-11-28 |
| hdf | 4.2r1 | hdf/4.2r1 | 2006-06-13 | 2006-06-13 |
| hdf | 4.2r2 | hdf/4.2r2 | 2008-02-11 | 2008-02-11 |
| hdf | 4.2r3 | hdf | 2008-02-05 | 2006-02-05 |
| hdf5 | 1.6.4 | hdf5/1.6.4 | 2006-06-12 | 2006-06-12 |
| hdf5 | 1.6.5 | hdf5 | 2008-03-14 | 2009-02-18 |
| hdf5 | Parallel 1.6.5 | hdf5_par | 2008-03-14 | 2009-02-18 |
| hdf5 | Parallel 1.6.4 | hdf5_par/1.6.4 | 2006-06-12 | 2006-06-12 |
| nco | 3.0.1 | nco/3.0.1 | 2005-08-01 | 2005-08-01 |
| nco | 3.9.1 | nco | 2007-11-13 | 2007-11-13 |
| ncview | 1.93c | ncview | 2007-10-01 | 2007-10-01 |
| netcdf | 3.6.0 | netcdf/3.6.0 | 2005-08-01 | 2005-08-01 |
| netcdf | 3.6.2 | netcdf | 2007-10-10 | 2007-11-13 |
| Parallel NetCDF | 1.0.2pre | pnetcdf | 2007-06-15 | 2007-06-15 |
| silo | 4.6.1 | silo | 2009-02-19 | 2009-02-19 |
Visualization Libraries
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| ncar | 4.4.0 | ncar/4.4.0 | ||
| ncar | 4.4.2 | ncar | ||
| ncar | 5.0.0 | ncar/5.0.0 | ||
| pgplot | 5.2 | pgplot |
Code Optimization and Performance Tools
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| IPM | 0.918 | ipm | ||
| papi | 3.1.0 | papi | ||
| tau | 2.16.4 | tau |
Code Debugging Tools
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| gdb | 6.4 | none | ||
| totalview | 8.1.0-0 | totalview | ||
| totalview | 8.2.0-0 | totalview/8.2.0-0 |
Applications: Chemistry
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| amber | 9.0 | amber/9.0 | 2008-10-19 | 2008-10-20 |
| gamess | 2004.11 | gamess/2004.11 | 2005-09-08 | 2005-09-08 |
| gamess | 2007.03 | gamess/2007.03 | 2008-05-14 | |
| gaussian03 | d2 | g03/d2 | 2007-06-05 | |
| gaussian03 | e1 | g03/e1 | 2008-04-28 | 2008-06-05 |
| gaussian09 | a2 | g09/a2 | 2009-07-16 | 2009-07-16 |
| gromacs | 3.3 | gromacs/3.3 | 2005-06-06 | |
| gromacs | 3.3.3 | gromacs/3.3.3 | 2008-05-21 | 2008-05-23 |
| molpro | 2006.1 | molpro/2006.1_serial | 2007-10-02 | |
| molpro | 2006.1 | molpro/2006.1 | 2008-04-20 | 2008-04-20 |
| molpro | 2008.1 | molpro/2008.1 | 2008-03-18 | 2008-03-31 |
| namd | 2.6 | namd/2.6 | 2007-03-21 | 2008-10-19 |
| nwchem | 5.0 | nwchem/5.0 | 2007-03-27 | 2007-08-03 |
| q-chem | 3.1 | qchem/3.1 | 2007-06-26 | 2007-06-26 |
| q-chem | 3.1 serial | qchem/3.1s | 2007-06-24 | |
| q-chem | 3.2 | qchem/3.2 | 2009-03-31 | 2007-04-07 |
| q-chem | 3.2 | qchem/3.2s | 2009-03-31 |
Applications: Material Sciences
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| ABINIT | 5.4.4 | abinit/5.4 | 2008-06-04 | 2008-06-04 |
| siesta | 2.0.1 | siesta/2.0.1 | 2007-12-06 | 2007-12-06 |
| vasp | 4.6.31 | vasp/4.6.31 | 2008-03-22 | 2007-04-12 |
Applications: Climate
| Package | Version | Module | Install Date | Date Made Default |
|---|
Applications: Visualization
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| ghostview | 8.51 | gs | ||
| gnuplot | 4.1 | not needed | ||
| gnuplot | 4.2.3 | gnuplot/4.2.3 | ||
| grace | 5.1.19 | grace | ||
| idl | 6.2 | idl/6.2 | ||
| idl | 6.3 | idl/6.3 | ||
| idl | 6.4 | idl/6.4 | ||
| idl | 7.0 | idl/7.0 | 2008-03-03 | 2008-03-12 |
| idl | 7.1 | idl | 2009-06-09 | 2009-09-24 |
| ImageJ | 1.41 | imagej | ||
| imagemagick | 6.2.5 | imagemagick | ||
| imagemagick | 6.3.9 | imagemagick | ||
| vmd | 1.8.3 | vmd |
Applications: Mathematics
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| mathematica | 5.2 | mathematica | ||
| matlab | 7.1.0.R14 | matlab/7.1.0.R14 | ||
| matlab | R2006a | matlab | ||
| matlab | R2009b | matlab | 2009-10-28 |
Applications: Bioinformatics
| Package | Version | Module | Install Date | Date Made Default |
|---|
Applications: Physics
| Package | Version | Module | Install Date | Date Made Default |
|---|
Applications: General
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| Acroread | 5.0.9 | none | ||
| MySQL | 4.1.16 | mysql |
General Programming Tools and Utilities
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| cvs | 1.11.14 | none | ||
| GNU | 1.0 | GNU | ||
| modules | 3.1.6 | not needed | ||
| perl | 5.8.3 | not needed | ||
| python | 2.3.3 | not needed | ||
| rcs | 5.7 | rcs |
| Package | Version | Module | Install Date | Date Made Default |
|---|---|---|---|---|
| bbcp | 07.11.09.01.0 | none |
