Software Installed on DaVinci
NERSC staff are actively building and installing
software tools and applications on DaVinci. Please contact
consult@nersc.gov if
a particular piece of desired software is not found.
DaVinci Software List
The following table lists software installed on NERSC's SGI Altrix 350 server, DaVinci.
Software is available through the modules
software management system where a module name is given.
Click on the link called "NERSC" for information about using the
software at NERSC. "???" in the Version column means that the
software is not yet installed on DaVinci.
DaVinci Operating System Software
| Package | Version | Module |
Install Date | Date Made Default |
|---|
DaVinci Parallel Programming Libraries
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| MPI | 1.11.1 |
not needed |
|
|
Compilers/Languages
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| as |
2.15.90.0.1.1 |
none |
|
|
| gcc | 3.3.3 |
not needed |
|
|
| icc |
8.1 |
intel |
|
|
| icpc |
8.1 |
intel |
|
|
| ifort |
8.1 |
intel |
|
|
Mathematical Libraries
Intel provides a highly optimized library of BLAS, LAPACK and FFT
routines, the Intel Math Kernel Library (MKL) which is described at the
Intel MKL Reference Manual.
This library is installed on DaVinci and
can be used with both the Intel and GNU compilers. To use it with
the Intel compilers or GNU compilers, load the mkl module, and compile and link with
the $MKL flag.
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| fftw | 3.1.2 |
fftw/3.1.2 |
|
|
| MKL |
7.2.1 |
mkl |
|
|
| udunits |
1.12.4 |
udunits |
|
|
I/O Libraries
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| cdo | 1.0.9 |
cdo |
2007-11-21 |
2007-11-21 |
| hdf | 4.2r1 |
hdf/4.2r1 |
2005-08-02 |
2005-08-02 |
| hdf | 4.2r3 |
hdf |
2008-02-11 |
2008-02-20 |
| hdf5 | Parallel 1.6.4 |
hdf5_par |
2006-04-12 |
2006-04-12 |
| hdf5 | Serial 1.6.4 |
hdf5 |
2006-04-12 |
2006-04-12 |
| nccmp | 0.5.1 |
nccmp/0.5.1 |
2007-03-02 |
|
| nccmp | 0.5.2 |
nccmp |
2007-03-02 |
2007-03-02 |
| nco | 3.0.2 |
nco/3.0.2 |
2005-09-09 |
2005-09-09 |
| nco | 3.9.1 |
nco |
2007-07-30 |
2007-10-10 |
| ncview | 1.93a |
ncview/1.93a |
2006-03-17 |
2006-03-17 |
| ncview | 1.93f |
ncview |
2008-10-06 |
2008-10-06 |
| ncview | 1.93f |
ncview |
2008-10-06 |
2008-10-06 |
| netcdf | 3.6.0 |
netcdf/3.6.0 |
2007-07-20 |
2007-07-20 |
| netcdf | 3.6.2 |
netcdf |
2007-11-21 |
2007-11-21 |
Visualization Libraries
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| ncar | 4.4.0 |
ncar/4.4.0 |
|
|
| ncar | 4.4.2 |
ncar |
|
|
| ncar | 5.0.0 |
ncar/5.0.0 |
|
|
| ncar | Double precision 4.3.1 |
ncar_dp |
|
|
Code Debugging Tools
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| gdb |
6.3 |
none |
|
|
| idb |
8.1-11 |
intel |
|
|
Applications: Visualization
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| avs | 5.5 |
avs |
2005-08-12 |
2005-08-12 |
| avs-express | 7.0 |
avs-express/7.0 |
2005-02-18 |
|
| avs-express | 7.1 |
avs-express/7.1 |
2006-06-06 |
|
| avs-express | 7.2 |
avs-express |
2007-12-21 |
2008-01-18 |
| ensight | 8.0.4a |
ensight/8.0.4a |
2005-04-28 |
|
| ensight | 8.0.5a |
ensight/8.0.5a |
2005-04-27 |
|
| ensight | 8.0.6a |
ensight/8.0.6a |
2005-05-20 |
|
| ensight | 8.0.7g |
ensight/8.0.7g |
2005-10-18 |
|
| ensight | 8.2 |
ensight/8.2 |
2006-09-01 |
|
| ensight | 8.2.4a |
ensight |
2007-02-28 |
2007-03-07 |
| ferret | 6.01 |
ferret |
2008-09-09 |
|
| ferret | 6.08 |
ferret |
2008-09-09 |
2008-09-25 |
| gimp | 2.0 |
gimp |
|
|
| gnuplot | 4.1 |
not needed |
|
|
| grace | 5.1.19 |
grace |
|
|
| grads |
1.9b4 |
grads |
2005-09-13 |
2005-09-13 |
| grads |
2.0.a7.1 |
grads |
2009-10-16 |
2009-12-03 |
| idl | 6.1 |
idl/6.1 |
|
|
| idl | 6.2 |
idl/6.2 |
|
|
| idl | 6.3 |
idl/6.3 |
|
|
| idl | 6.4 |
idl/6.4 |
|
|
| idl | 7.0 |
idl/7.0 |
2008-03-03 |
2008-03-12 |
| idl | 7.1 |
idl |
2009-06-09 |
2009-09-24 |
| ImageJ |
1.41 |
imagej |
|
|
| imagemagick | 5.5.7 |
not needed |
|
|
| paraview | 2.0.2 |
paraview |
|
|
| paraview | 2.5 |
paraview/2.5 |
|
|
| paraview_mpi | 2.0.2 |
paraview/2.0.2_mpi |
|
|
| paraview_mpi | 2.5 |
paraview/2.5_mpi |
|
|
| rasmol | 2.7.2.1.1 |
rasmol |
|
|
| tecplot |
360_2008 |
tecplot/360_2008 |
|
|
| visit | 1.10.0 |
visit |
|
|
| visit | 1.11.1 |
visit |
2008-12-18 |
2009-01-13 |
| visit | 1.7 |
visit |
2007-11-30 |
|
| visit | 1.8.0 |
visit |
2008-05-27 |
|
| visit | 1.9.0 |
visit |
2008-11-05 |
|
| vmd | 1.8.3 |
vmd |
2008-09-06 |
2008-09-06 |
| vmd | 1.8.6 |
vmd |
2008-09-06 |
|
Applications: Mathematics
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| mathematica | 5.2 |
mathematica |
|
|
| matlab | 7.1.0.R14 |
matlab/7.1.0.R14 |
|
|
| matlab | R2006a |
matlab |
|
|
| R | 2.7.1 |
R |
2008-07-15 |
2008-07-22 |
General Programming Tools and Utilities
| Package | Version | Module |
Install Date | Date Made Default |
|---|
| cvs | 1.11.14 |
none |
|
|
| GNU | 1.0 |
GNU |
|
|
| modules | 3.1.6 |
not needed |
|
|
| perl | 5.8.3 |
not needed |
|
|
| python | 2.3.3 |
not needed |
|
|
| python | 2.5.2 |
python |
2008-06-14 |
2008-06-14 |
| 
