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NERSC 3 Greenbook

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North-West Computational Chemistry Suite

Edoardo Aprà, David E. Bernholdt, David M. Elwood, Miles J. Deegan, Michel Dupuis, George I. Fann, Martyn F. Guest, Maciej Gutowski, Herbert A. Früchtl, Robert J. Harrison, Rick A. Kendall, Rik J. Littlefield, Jeffrey A. Nichols, Jaroslaw Nieplocha, Hugh L. Taylor, Tjerk P. Straatsma, John B. Nicholas, Ramzi A. Kutteh, Gregory S. Thomas and Adrian T. Wong
High Performance Computational Chemistry Group
Environmental and Molecular Sciences Laboratory
Pacific Northwest National Laboratory

NWChem is computational chemistry package for the study of large chemical systems that is under development and is designed to run on high-performance parallel supercomputers as well as workstation clusters. It aims to be scalable both in the ability to treat large problems efficiently, and in its usage of available parallel computing resources. The suite utilizes parallel programming tools (TCGMSG and the Global Array library) developed by PNNL staff. NWChem has been optimized to perform calculations on large molecules using large parallel computers; the code has been ported to the following MPPs: KSR-1/2, Intel Delta/Paragon, CRAY T3D and IBM SP1/2.

Current functionality includes:


 
Figure 33: NWChem: DFT Scalability on Various MPP Supercomputers
\begin{figure}
\centerline{
\psfig {figure=gb_nwceff.eps,width=150mm,height=150mm}
}
\vspace{10mm}\end{figure}

Quantum Chemical study of the binding of alkali metal cations with crown-ethers: effects of computational parameters and methods.

Crown ethers have drawn much experimental and theoretical interest since they were first described by Pederson in 1967. These cyclic polyethers show a remarkable range of specificity for metal cations and are being considered as separation agents for radioactive cations in waste steams. As a prototypical interaction of these systems we have studied the binding of various alkali metal cations with multiple crown ether derivatives using Local and Non-Local DFT and MP2 methods. Binding energies for these system have been determined from moieties whose structures have been optimized using a variety of approximations within the DFT method, including: various basis sets (orbital and charge density fitting), numerical grids (various levels of accuracy, and types), and basis set superposition errors (orbital and grid).

 
Figure 34: Binding energies (in kcal/mol) and bond lengths (in Å) for the modified 18-crown-6 molecule. The number in parentheses are obtained after estimating the BSSE error using the CP method.
\begin{figure}
\center
\centerline{
\psfig {figure=gb_nwccek.eps,width=150mm,hei...
 ...94 \\  & &&\\  BE & -77.1 (-75.8) & & -75.8 (-70.6)\\  \end{tabular}\end{figure}


NERSC 3 Greenbook

next up previous contents
Next: Parallel Climate Modeling on Up: Biological and Environmental Research Previous: Molecular Structures of Carcinogen-DNA
Rick A Kendall
7/13/1998