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Appendix G

Acronyms and Abbreviations

AGM

Associate General Manager

AIX

Advanced Interactive eXecutive (an IBM operating system)

ALS

Advanced Light Source at Berkeley Lab

AMBER

Assisted Model Building with Energy Refinement

AMR

Adaptive mesh refinement

ASC

Advanced Simulation and Computing Program, National Nuclear Security Administration (DOE)

ASCR-MICS

Office of Advanced Scientific Computing Research,
Mathematical, Information, and Computational Sciences Division (DOE)

AVHF

Alexander von Humboldt Foundation (Germany)

BER

Office of Biological and Environmental Research (DOE)

BES

Office of Basic Energy Sciences (DOE)

BGL

Blue Gene/L, Argonne National Laboratory

BMBF

Bundesministerium für Bildung und Forschung (Germany)

BNL

Brookhaven National Laboratory

BRAHMS

Broad Range Hadron Magnetic Spectrometer at Brookhaven National Laboratory

BSPO

Belgian Science Policy Office

CAM

Community Atmospheric Model

CCSE

Center for Computational Sciences and Engineering (Berkeley Lab)

CCSM

Community Climate System Model

CENIC

Corporation for Education Network Initiatives in California

CMSO

Center for Magnetic Self-Organization at the University of Chicago

COLTRIMS

Cold target recoil ion momentum spectroscopy

CPU

Central processing unit

CSIR

Council of Scientific and Industrial Research (India)

CVS

Concurrent Versions System

DAE

Department of Atomic Energy (India)

DARPA

Defense Advanced Research Projects Agency

DEFRA

Department for Environment, Food and Rural Affairs (UK)

DFG

Deutsche Forschungsgemeinschaft (Germany)

DFT

Density functional theory

DNS

Direct numerical simulation

DOE

U.S. Department of Energy

DST

Department of Science and Technology (India)

EPSRC

Engineering and Physical Sciences Research Council (UK)

ES

Earth Simulator (Japan)

ESnet

Energy Sciences Network (DOE)

FAPESP

Fundação de Amparo à Pesquisa do Estado de São Paulo (Brazil)

FES

Office of Fusion Energy Sciences (DOE)

FOM

Fundamenteel Onderzoek der Materie (Netherlands)

GACR

Grant Agency of the Czech Republic

GB

Gigabyte

GMODGO

Graduiertenkolleg Molekulare Organisation und Dynamik an Grenz- und Oberflächen (Germany)

GMRDP

Government Meteorological Research and Development Programme (UK)

GPFS

General Parallel File System (IBM)

HadCM3

Hadley Centre Coupled Model, version 3

HEP

Office of High Energy Physics (DOE)

HPC

High performance computing

HPCMP

High Performance Computing Modernization Program (U.S. Department of Defense)

HPCS

High Productivity Computer Systems

HPSS

High Performance Storage System

HSM

Hierarchical Storage Manager

ilmm

in lucem Molecular Mechanics

IN2P3

Institut National de la Physique Nucléaire et de la Physique des Particules (France)

INCITE

Innovative and Novel Computational Impact on Theory and Experiment (DOE)

I/O

Input/output

ITER

A multinational tokamak experiment to be built in France (Latin for “the way”)

JGI

Joint Genome Institute (DOE)

JSPS

Japan Society for the Promotion of Science

KamLAND

Kamioka Liquid Scintillator Anti-Neutrino Detector (Japan)

KUL

Katholieke Universiteit Leuven (Belgium)

LANL

Los Alamos National Laboratory

LBNL

Lawrence Berkeley National Laboratory

LBW

Landesstiftung Baden-Württemberg (Germany)

MAN

Metropolitan area network

MAPS

Memory Access Pattern Signature

MB

Megabyte

MEC

Ministry of Education of China

MECS

Ministerio de Educación y Ciencia (Spain)

MEXT

Ministry of Education, Culture, Sports, Science and Technology (Japan)

MPP

Massively parallel processing

MSCF

Molecular Science Computing Facility at Pacific Northwest National Laboratory

NASA

National Aeronautics and Space Administration

NCAR

National Center for Atmospheric Research

NCCS

National Center for Computational Sciences at Oak Ridge National Laboratory

NERSC

National Energy Research Scientific Computing Center

NGF

NERSC Global Filesystem

NMR

Nuclear magnetic resonance

NNSFC

National Natural Science Foundation of China

NOAA

National Oceanographic and Atmospheric Administration

NP

Office of Nuclear Physics (DOE)

NPACI

National Partnership for Advanced Computational Infrastructure

NSA

Near-surface alloy

NSF

National Science Foundation

OGSA

Open Grid Services Architecture

ORNL

Oak Ridge National Laboratory

OSP

Open Software and Programming Group (NERSC)

PB

Petabyte

PCM

Parallel Climate Model

PDSF

Parallel Distributed Systems Facility (NERSC)

PGF

Production Genome Facility (JGI)

PHENIX

Pioneering High Energy Nuclear Interaction Experiment at Brookhaven National Laboratory

PHOBOS

A detector experiment at Brookhaven National Laboratory

PMEMD

Particle mesh Ewald molecular dynamics

PPDG

Particle Physics Data Grid

PSCSR

Polish State Committee for Scientific Research

QGP

Quark-gluon plasma

RFP

Request for proposals

RHIC

Relativistic Heavy Ion Collider at Brookhaven National Laboratory

RMST

Russian Ministry of Science and Technology

SC

Office of Science (DOE)

SciDAC

Scientific Discovery through Advanced Computing (DOE)

SDSA

Science-Driven System Architecture (NERSC)

SNSF

Swiss National Science Foundation

SSP

Sustained System Performance benchmark

STAA

Science and Technology Assistance Agency (Slovakia)

STAR

Solenoidal Tracker at RHIC

TB

Terabyte

TCP

Transmission Control Protocol

UC

University of California

UCB

University of California, Berkeley

USAF-OSR

U.S. Air Force Office of Scientific Research

UWM

University of Wisconsin-Madison

ViVA

Virtual Vector Architecture

WHOI

Woods Hole Oceanographic Institution