NERSCPowering Scientific Discovery Since 1974

Rebecca Hartman-Baker

head shot
Rebecca J. Hartman-Baker Ph.D.
Group Leader
Phone: (510) 486-4810
Fax: (510) 486-6459
User Engagement Group
1 Cyclotron Road
Mail Stop 59R4010A
Berkeley, CA 94720 US

 

Biographical Sketch

Rebecca Hartman-Baker, the group leader, is a computational scientist with expertise in the development of scalable parallel algorithms for the petascale and beyond. Her other research interests include inverse and ill-posed problems, numerical optimization methods, and developing effective techniques for training users of HPC resources. She joined NERSC from iVEC in Australia, where she coached two teams to the Student Cluster Competition at the annual Supercomputing conference, led the HPC training program for a time, and was in charge of the decision-making process for determining the architecture of the petascale supercomputer at the Pawsey Supercomputing Centre

She began her career at Oak Ridge National Laboratory, where for her work on the initial implementation of load balancing in MADNESS as a postdoc she was on the R&D100-award winning team. As a scientific computing liaison in the Oak Ridge Leadership Computing Facility, she worked with a wide variety of scientific fields, including chemistry, nuclear physics, and logistics, and led the liaison task in the scientific computing group.

Rebecca earned a PhD in computer science, with a certificate in computational science and engineering, from the University of Illinois at Urbana-Champaign.

 

Journal Articles

Yun (Helen) He, Brandon Cook, Jack Deslippe, Brian Friesen, Richard Gerber, Rebecca Hartman­-Baker, Alice Koniges, Thorsten Kurth, Stephen Leak, Woo­Sun Yang, Zhengji Zhao, Eddie Baron, Peter Hauschildt, "Preparing NERSC users for Cori, a Cray XC40 system with Intel Many Integrated Cores", Concurrency and Computation: Practice and Experience, August 2017, 30, doi: 10.1002/cpe.4291

The newest NERSC supercomputer Cori is a Cray XC40 system consisting of 2,388 Intel Xeon Haswell nodes and 9,688 Intel Xeon‐Phi “Knights Landing” (KNL) nodes. Compared to the Xeon‐based clusters NERSC users are familiar with, optimal performance on Cori requires consideration of KNL mode settings; process, thread, and memory affinity; fine‐grain parallelization; vectorization; and use of the high‐bandwidth MCDRAM memory. This paper describes our efforts preparing NERSC users for KNL through the NERSC Exascale Science Application Program, Web documentation, and user training. We discuss how we configured the Cori system for usability and productivity, addressing programming concerns, batch system configurations, and default KNL cluster and memory modes. System usage data, job completion analysis, programming and running jobs issues, and a few successful user stories on KNL are presented.

Robert J. Harrison, Gregory Beylkin, Florian A. Bischoff, Justus A. Calvin, George I. Fann, Jacob Fosso-Tande, Diego Galindo, Jeff R. Hammond, Rebecca Hartman-Baker, Judith C. Hill, Jun Jia, Jakob S. Kottmann, M-J. Yvonne Ou, Laura E. Ratcliff, Matthew G. Reuter, Adam C. Richie-Halford, Nichols A. Romero, Hideo Sekino, William A. Shelton, Bryan E. Sundahl, W. Scott Thornton, Edward F. Valeev, Álvaro Vázquez-Mayagoitia, Nicholas Vence, Yukina Yokoi, "MADNESS: A Multiresolution, Adaptive Numerical Environment for Scientific Simulation", SIAM Journal on Scientific Computing, October 27, 2016, 38:S123-S142,

Rebecca J. Hartman-Baker, Daniel J. Grimwood, Valerie Maxville, "Evaluating Parallel Programming Tools to Support Code Development for Accelerators", Procedia Computer Science, 2014, 2076-2079,

Rebecca J. Hartman-Baker, Hai Ah Nam, "Optimizing Nuclear Physics Codes on the XT5", Proceedings of CUG 2011, 2011,

Conference Papers

Yun (Helen) He, Brandon Cook, Jack Deslippe, Brian Friesen, Richard Gerber, Rebecca Hartman­-Baker, Alice Koniges, Thorsten Kurth, Stephen Leak, Woo­Sun Yang, Zhengji Zhao, Eddie Baron, Peter Hauschildt, "Preparing NERSC users for Cori, a Cray XC40 system with Intel Many Integrated Cores", Cray User Group 2017, Redmond, WA. Best Paper First Runner-Up., May 12, 2017,

Mario Melara, Todd Gamblin, Gregory Becker, Robert French, Matt Belhorn, Kelly Thompson, Peter Scheibel, Rebecca Hartman-Baker, "Using Spack to Manage Software on Cray Supercomputers", Cray User Group 2017, 2017,

Presentation/Talks

Yun (Helen) He, Brandon Cook, Jack Deslippe, Brian Friesen, Richard Gerber, Rebecca Hartman-Baker, Alice Koniges, Thorsten Kurth, Stephen Leak, Woo-Sun Yang, Zhengji Zhao, Eddie Baron, Peter Hauschildt, Preparing NERSC users for Cori, a Cray XC40 system with Intel Many Integrated Cores, Cray User Group 2017, Redmond, WA, May 12, 2017,

Rebecca Hartman-Baker, NERSC Overview, NERSC New User Training, February 23, 2017,

Rebecca Hartman-Baker, Accounts and Allocations, NERSC New User Training, February 23, 2017,

Rebecca Hartman-Baker, Craypat and Reveal, NERSC New User Training, February 23, 2017,

Rebecca J. Hartman-Baker, Past, Present, and Future Parallel Programming Paradigms, March 24, 2016,